| 1 | Elias Lehman | Vision Academy U20 | 10 |
| 1 | Okyster Kanyenda | MK Academy U20 | 10 |
| 3 | Gift Phiri | Mpira mmudzi mwathu U20 | 9 |
| 4 | Daniel Chirwa | Chibavi Real stars U20 | 7 |
| 5 | Kazembe Mlenga | Vuwa Football Academy U20 | 6 |
| 5 | Khumbo Msiska | Mpira mmudzi mwathu U20 | 6 |
| 5 | Precious Mwenda | Mseteka Welding Hammers U20 | 6 |
| 8 | Opportunity Kalua | Vuwa Football Academy U20 | 5 |
| 9 | Angel Manda | Mpira mmudzi mwathu U20 | 4 |
| 9 | Blessings Chigo | Vuwa Football Academy U20 | 4 |
| 9 | Chimwemwe Khonje | Mzuzu Tigers U20 | 4 |
| 9 | Gracious Chavula | Area 1B Academy U20 | 4 |
| 9 | Haroon Omar | Mzuzu Tigers U20 | 4 |
| 9 | Julie Stokyo |  Topik Academy U20 | 4 |
| 9 | Kelvin Singini | MK Academy U20 | 4 |
| 9 | Osman Mfune | Young Buffaloes U20 | 4 |
| 9 | Wisdom Mchenga | Chibavi Police U20 | 4 |
| 18 | Emmanuel Kosamu | Area 1B Academy U20 | 3 |
| 18 | Emmanuel Mtika | Area 1B Academy U20 | 3 |
| 18 | France Mwalwanda | Vision Academy U20 | 3 |
| 18 | Isaac Mvula | Golden Stars U20 | 3 |
| 18 | Jasper Nyirenda | Golden Stars U20 | 3 |
| 18 | Maganizo Chunga | Mzuzu City Hammers Youth U20 | 3 |
| 18 | Moses Mtambo | Young Buffaloes U20 | 3 |
| 18 | Shadreck Mwanjazi | Chibavi Police U20 | 3 |
| 18 | Smith Kadenge Luhanga | Young Buffaloes U20 | 3 |
| 18 | Wayson Mwanza | Vuwa Football Academy U20 | 3 |
| 21 other scorers | | 2 |
| 64 other scorers | | 1 |
| Own Goals | | 2 |